I was in for P2097 and they did this at the same time.
FCA is deactivated after the update is applied. If the cruise control is on,* pressing the FCA button just gives a warning that FCA is deactivated. Turning off cruise control allows you to re-activate FCA and then everything works as normal.
This is probably in the manual, but it provided a couple of minutes of frustration for me and I'm still not sure why FCA activation is connected to the cruise control.
* I don't mean "engaged", but just "on", i.e., the cruise control icon is white.